PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0747s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 305aa    MW: 34776.9 Da    PI: 5.6883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0747s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10123169455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Cagra.0747s0001.1.p 123 EHVLAERKRREKLSEKFIALSALLPGL-----KKADKVTVLDDAISRMKQLQ 169
                          5899***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.405119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15123184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15123187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-9124173No hitNo description
SMARTSM003536.5E-13125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGDFITLPD FSLEDIDFDF NIYEADDMIM DSQRAQERSS SHFDHHQMHL EFLREKLPKS  60
ADVKPMMKII NNNNVPRLIS FDFSSNVSSS PAVDEIFMDK LVERGTKRKT CSHGTRSPVL  120
AKEHVLAERK RREKLSEKFI ALSALLPGLK KADKVTVLDD AISRMKQLQE QIRKLKEEKE  180
AKREMESMIL VKRSKVLFDE ETDLSSSCPS DNSHNELFDQ ALPEIEAKIS QNDVLIRIHC  240
EKSKGCMINI LNTIENLQLR IENSIVLPFG DSTLDITVLA QMDKDCSVSV IKDLVRNLRV  300
ALVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132ERKRRE
2128133RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295655.10.0hypothetical protein CARUB_v10024768mg
SwissprotQ1PF161e-157BH019_ARATH; Transcription factor bHLH19
TrEMBLR0HWW40.0R0HWW4_9BRAS; Uncharacterized protein
STRINGAT2G22760.11e-155(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-140bHLH family protein